Geropathology Imaging - Part of the The Jackson Laboratory Shock Center of Excellence in the Basic Biology of Aging
Omero to QuPath
This page will walk you through creating a Qupath project from files that are on an Omero server. If you have not installed these programs you can get directions to do that here Required Software there are also links to the manuals and tutorials that both groups provide.
Open QuPath
Open QuPath
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Start Qupath Project
by clicking on the create project button
Create a new Qupath Folder
Step 1: Navigate to desired location
Step 2: Select New Folder
Step 3: Enter name of Project
Step 4: Click Create
Step 5: Click Open
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On Top Menu
Select: Extensions-> Omero-> Browser Server -> New Server
Enter URL from OMERO
This will be specific to your OMERO Server
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Login If your OMERO requires it on top menu Select:
Extensions-> OMERO-> Manage Server Connections
Click Login
Provide Credentials
Select Relevant Scans for Import
Multiple Images can be Selected using the Command Key
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Select Import Selected Qupath
Click Import
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